package:
  name: pysam
  version: "0.8.3"

source:
  url: https://pypi.python.org/packages/source/p/pysam/pysam-0.8.3.tar.gz
  md5: b1ae2a8ec3c6d20be30b2bc1aa995bbf

build:
  number: 9
  skip: True  # [py>=37]
  script: {{ PYTHON }} -m pip install . --no-deps -vv

requirements:
  build:
    - {{ compiler('c') }}
  host:
    - pip
    - python
    - setuptools <58
    - cython
    - zlib
  run:
    - python
    - zlib

test:
  # Python imports
  imports:
    - pysam
#    - pysam.include
#    - pysam.include.htslib
#    - pysam.include.htslib.htslib
#    - pysam.include.samtools
#    - pysam.include.samtools.win32

about:
  home: https://github.com/pysam-developers/pysam
  license: MIT
  summary: Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

extra:
  identifiers:
    - biotools:pysam
    - doi:10.1093/bioinformatics/btp352
