# This file created by conda-build 3.18.9
# meta.yaml template originally from:
# /opt/recipe, last modified Sat Dec  7 14:41:09 2019
# ------------------------------------------------

package:
    name: bcftools
    version: '1.10'
source:
    sha256: 2a37721b944772633f334cc0897c43430d56cf59d7363b72d5cd2cfc9ae3af83
    url: https://github.com/samtools/bcftools/releases/download/1.10/bcftools-1.10.tar.bz2
build:
    number: '0'
    string: h5d15f04_0
requirements:
    build:
        - _libgcc_mutex 0.1 main
        - binutils_impl_linux-64 2.33.1 he1b5a44_7
        - binutils_linux-64 2.33.1 h9595d00_15
        - gcc_impl_linux-64 7.3.0 habb00fd_2
        - gcc_linux-64 7.3.0 h553295d_15
        - ld_impl_linux-64 2.33.1 h53a641e_7
        - libgcc-ng 9.2.0 hdf63c60_0
        - libstdcxx-ng 9.2.0 hdf63c60_0
    host:
        - _libgcc_mutex 0.1 main
        - bzip2 1.0.8 h516909a_1
        - ca-certificates 2019.11.28 hecc5488_0
        - curl 7.65.3 hf8cf82a_0
        - gsl 2.5 h294904e_1
        - htslib 1.10 h244ad75_0
        - krb5 1.16.3 h05b26f9_1001
        - libblas 3.8.0 14_openblas
        - libcblas 3.8.0 14_openblas
        - libcurl 7.65.3 hda55be3_0
        - libdeflate 1.3 h516909a_0
        - libedit 3.1.20170329 hf8c457e_1001
        - libgcc-ng 9.2.0 hdf63c60_0
        - libgfortran-ng 7.3.0 hdf63c60_2
        - libopenblas 0.3.7 h5ec1e0e_4
        - libssh2 1.8.2 h22169c7_2
        - libstdcxx-ng 9.2.0 hdf63c60_0
        - ncurses 6.1 hf484d3e_1002
        - openssl 1.1.1d h516909a_0
        - tk 8.6.10 hed695b0_0
        - xz 5.2.4 h14c3975_1001
        - zlib 1.2.11 h516909a_1006
    run:
        - gsl >=2.5,<2.6.0a0
        - htslib >=1.10,<1.11.0a0
        - htslib >=1.10,<1.11.0a0
        - libgcc-ng >=7.3.0
        - perl
        - zlib >=1.2.11,<1.3.0a0
        - zlib >=1.2.11,<1.3.0a0
test:
    commands:
        - bcftools -h
        - bcftools --version
        - bcftools plugin -lv
        - bcftools -h | grep polysomy
        - vcfutils.pl 2>&1 | grep vcfutils
about:
    home: https://github.com/samtools/bcftools
    license: GPL
    license_file: LICENSE
    summary: BCFtools is a set of utilities that manipulate variant calls in the Variant
        Call Format (VCF) and its binary counterpart BCF. All commands work transparently
        with both VCFs and BCFs, both uncompressed and BGZF-compressed.  Most commands
        accept VCF, bgzipped VCF and BCF with filetype detected automatically even
        when streaming from a pipe. Indexed VCF and BCF will work in all situations.
        Un-indexed VCF and BCF and streams will work in most, but not all situations.
extra:
    copy_test_source_files: true
    final: true
    identifiers:
        - biotools:bcftools
        - doi:10.1093/bioinformatics/btp352
