# -*- coding: utf-8 -*-
from __future__ import division, print_function
import click
import sys
from .. import __version__

# Monkey patch
click.core._verify_python3_env = lambda: None


CONTEXT_SETTINGS = {
    "help_option_names": ["-h", "--help"],
}


@click.version_option(__version__, "-V", "--version")
@click.group(context_settings=CONTEXT_SETTINGS)
@click.option("-v", "--verbose", help="Verbose logging", is_flag=True, default=False)
@click.option(
    "-d", "--debug", help="Post mortem debugging", is_flag=True, default=False
)
def cli(verbose, debug):
    """
    Type -h or --help after any subcommand for more information.

    """
    if verbose:
        pass
        # logger.setLevel(logging.DEBUG)

    if debug:
        import traceback

        try:
            import ipdb as pdb
        except ImportError:
            import pdb

        def _excepthook(exc_type, value, tb):
            traceback.print_exception(exc_type, value, tb)
            print()
            pdb.pm()

        sys.excepthook = _excepthook


from . import (
    expected_cis,
    expected_trans,
    insulation,
    pileup,
    eigs_cis,
    eigs_trans,
    saddle,
    dots,
    genome,
    sample,
    coverage,
    virtual4c,
    rearrange,
)