DUf ddlZddlmZddlmZddlmZejejdej d  ejd d ej d  ej ddde e ddej dde dej ddddddZ dS)N) merge_coolers)cliparse_field_paramout_pathF)exists)typein_paths)nargsr z --chunksizez-cz7Size of the merge buffer in number of pixel table rows.gsAT)helpr default show_defaultz--fieldzSpecify the names of value columns to merge as ''. Repeat the `--field` option for each one. Use ',dtype=' to specify the dtype. Include ',agg=' to specify an aggregation function different from 'sum'.)rr multiplez--appendz-az_Pass this flag to append the output cooler to an existing file instead of overwriting the file.)is_flagrrc t|rOd|D}t|\}}}} dt||D}dt|| D} ndgdd} }}t|||||| |rdnddS) a Merge multiple coolers with identical axes. OUT_PATH : Output file path or URI. IN_PATHS : Input file paths or URIs of coolers to merge. **Notes** Data columns merged: pixels/bin1_id, pixels/bin2_id, pixels/ Data columns preserved: chroms/name, chroms/length bins/chrom, bins/start, bins/end Additional columns in the the input files are not transferred to the output. c0g|]}t|dS)F)includes_colnumr).0args M/var/www/html/software/conda/lib/python3.11/site-packages/cooler/cli/merge.py zmerge..=s3   >A c5 9 9 9   ci|] \}}||| SN)rcoldts r zmerge..AsPPPgc2#rrci|] \}}||| Srr)rrfs rr!zmerge..BsGGG&#qsArcountNaw)mergebufcolumnsdtypesaggmode)lenzipr) r r chunksizefieldappendfield_specifiersr(_r)r*s rmerger3sh 5zz 5  EJ   #&'7"8FCPPWf)=)=PPPGGC$5$5GGG!(y$  #SSr)clickreducerr_utilrcommandargumentPathoptionintstrr3rrrr>sj """"""$$$$$$  5!9!9!9::: ":5:U+C+C+CDDD  B CII   L    ' ,,ED;:8,,,r