DUfS ddlZddlZddlmZddlmZddlmZejejde d ejd e d ej d d dej ddddddej ddej ddgdeddZ dS)N)util)cli)exit_on_broken_pipe chromsizesCHROMSIZES_PATH)typemetavarbinsizeBINSIZEz--outz-oz Output file (defaults to stdout))helpz--headerz-Hz2Print the header of column names as the first row.TF)ris_flagdefault show_defaultz --rel-idsz-i01ziInclude a column of relative bin IDs for each chromosome. Choose whether to report them as 0- or 1-based.)r rctj|d}tj||}|O|dd|d<t |dkr|dxxdz cc<| t j}nt|d}|r"|d d  |d d d d | |d d d d | dS)a Generate fixed-width genomic bins. Output a genome segmentation at a fixed resolution as a BED file. CHROMSIZES_PATH : UCSC-like chromsizes file, with chromosomes in desired order. BINSIZE : Resolution (bin size) in base pairs . T) all_namesNchrom)observedidrwr  F)seplineterminatorindexheader) rread_chromsizesbinnifygroupbycumcountintsysstdoutopento_csvflush)rr outrrel_idsbinsfs P/var/www/html/software/conda/lib/python3.11/site-packages/cooler/cli/makebins.pymakebinsr/ s@%jDAAAJ < G , ,D\\'D\99BBDDT w<<1   JJJ!OJJJ { J cNN   QqS  4E$     KKtDeKLLLGGIIIII)r%clickrr_utilrcommandargumentstrr$optionChoicer/r0r.r:sb &&&&&&  30ABBB Y777 gt"DEEE  =    sCj ! ! 6 QFE87CB(r0