DUf fddlZddlmZddlmZejejddejd d d d dZejejdeejdeejdddd ddZ ejejdeejdeejdddd dejdddd ddZ ejejdeejdeejdddd ddZ ejejdeejdde d Z ejejdeejdde d!ZdS)"N)fileops)cli cool_path COOL_PATH)metavarz--longz-lzLong listing formatT)helpis_flagcddlm}tj|D]U}|dz|z}|r5||j}||d}n|d|d}t j|At j|VdS)z* List all coolers inside a file. r)Coolerz::Nz  ,)apir r list_coolersbinsizeclickecho)rlongr group_pathurirss O/var/www/html/software/conda/lib/python3.11/site-packages/cooler/cli/fileops.pylsrs*955   $+  fSkk)G((())g))) JqMMMM JsOOOO  src_uri)typedst_uriz --overwritez-wz;Truncate and replace destination file if it already exists.F)r r defaultc4tj|||dS)z Copy a cooler from one file to another or within the same file. See also: h5copy, h5repack tools from HDF5 suite.  overwriteN)rcprrr"s rr#r#s!4 Jw9555555rz--softz-szCreates a soft link rather than a hard link if the source and destination file are the same. Otherwise, creates an external link. This type of link uses a path rather than a pointer.c6tj||||dS)z Create a hard link to a cooler (rather than a true copy) in the same file. Also supports soft links (in the same file) or external links (different files). )r"softN)rln)rrr"r&s rr'r';s#4 Jw94@@@@@@rc4tj|||dS)z0 Rename a cooler within the same file. r!N)rmvr$s rr)r)Xs! Jw9555555rrz-Lz--levelcXtj||}tj|dS)z+ Display a file's data hierarchy. N)rpprint_data_treerrrlevelts rtreer/j'  e,,A JqMMMMMrcXtj||}tj|dS)z0 Display a file's attribute hierarchy. N)rpprint_attr_treerrr,s rattrsr3vr0r)rrrcommandargumentoptionrstrr#r'r)intr/r3rrr;s-   [111 h#8$GGGHG21(  $$$ $$$  F   66%$%$6&  $$$ $$$  F     ;  AA%$%$&A  $$$ $$$  F   66%$%$6 C    dIC((()(!  C    dIC((()(! r