tf 8ddlZddlmZddlmZejej ddej d d d d dZejej deej deej dddd ddZ ejej deej deej dddd dej dddd ddZ ejej deej deej dddd ddZ ejej deej dde d Z ejej deej dde d!Zy)"N)fileops)cli cool_path COOL_PATH)metavarz--longz-lzLong listing formatT)helpis_flagcddlm}tj|D]Y}|dz|z}|r8||j}||d}n|d|d}t j |Et j |[y)z* List all coolers inside a file. r)Coolerz::Nz  ,)apir r list_coolersbinsizeclickecho)rlongr group_pathurirss \/var/www/html/software/conda/envs/higlass/lib/python3.12/site-packages/cooler/cli/fileops.pylsrs{**95  $+ Sk))Ge<(e2ga[) JJqM JJsO src_uri)typedst_uriz --overwritez-wz;Truncate and replace destination file if it already exists.F)r r defaultc4tj|||y)z Copy a cooler from one file to another or within the same file. See also: h5copy, h5repack tools from HDF5 suite.  overwriteN)rcprrr"s rr#r#s4 JJw95rz--softz-szCreates a soft link rather than a hard link if the source and destination file are the same. Otherwise, creates an external link. This type of link uses a path rather than a pointer.c6tj||||y)z Create a hard link to a cooler (rather than a true copy) in the same file. Also supports soft links (in the same file) or external links (different files). )r"softN)rln)rrr"r&s rr'r';s4 JJw94@rc4tj|||y)z0 Rename a cooler within the same file. r!N)rmvr$s rr)r)Xs JJw95rrz-Lz--levelcZtj||}tj|y)z+ Display a file's data hierarchy. N)rpprint_data_treerrrlevelts rtreer/j!   e,A JJqMrcZtj||}tj|y)z0 Display a file's attribute hierarchy. N)rpprint_attr_treerrr,s rattrsr3vr0r)rrrcommandargumentoptionrstrr#r'r)intr/r3rrr;sL   [1 h#8$GH2(  $ $  F   6%%6&  $ $  F     ;  A%%&A  $ $  F   6%%6 C  dIC()! C  dIC()!r