tf#PddlZddlZddlZddlZddlZddlmZdZdZ dZ dZ y)N) abs2genomicctjd}|j|j}}g}|D]3}|j dddDcgc] }t |}}t ||} tj| j} | jr| jnd} | jr| jnd} | xr | |kDxr| |k} | j| rtjntj} tj| jj!d}|| rdnd| j"d}|j%||f6|Scc}w) a Retrieve multiple multivec tiles from tids. ---------- filename: string The multires file containing the multivec data tile_ids: [str,...] A list of tile_ids (e.g. xyx.0.0) identifying the tiles to be retrieved float16.rrzutf-8float32)densedtypeshape)npfinfominmaxsplitintget_single_tileisnananysizeastyperr base64 b64encoderaveldecoder append)filenametile_idsf16f16_minf16_maxgenerated_tilestile_iditile_posmahas_nanma_maxma_minuse_f16 ma_base64 tile_values `/var/www/html/software/conda/envs/higlass/lib/python3.12/site-packages/clodius/tiles/multivec.pytilesr. s6 ((9 CwwWGO6$+MM#$6q$;wPQ@RST U GGI 77Nc|}g}d}d} d} d} d} t|D cgc]} | d c} ||D]\}}}ttj||z |z }| ||z z } ||d}| ||z z } |dz }t j ||z }t j||z }||k\r |dt |d|||}| |||z zz } | | z }||kDr|dd} t|r| t|z } |j|tj|d|dScc} w#t$rtj||df}YXwxYw)a Get the tile value given the start and end positions and chromosome positions. Drop bins at the ends of chromosomes if those bins aren't full. Parameters: ----------- f: h5py.File An hdf5 file containing the data chromsizes: [('chr1', 1000), ....] An array listing the chromosome sizes resolution: int The size of each bin, except for the last bin in each chromosome. start_pos: int The start_position of the interval to return end_pos: int The end position of the interval to return Returns ------- return_vals: [...] A subset of the original genome-wide values containing the values for the portion of the genome that is visible. rrr1valuesN) rrr ceilmathfloorstrr< IndexErrorr>r concatenate)rBrFrC start_posend_posr binsizearrayscountcurrent_binned_data_positioncurrent_data_position num_added total_lengthccidstartendn_binschromxoffsets r-r;r;Ws8GF E$% IL&j'A!'A9gVEUCRWWcEkW456e # > -sOA&E !S5[ 0 ! QJE 57?3Iiig .GG# - Z1(;EB9WUA (Gw7J,K K ( 24IIFcrF  1vSV#   aKEX >>& !*E!H --Y(B| - &%(+,A  -s D)!A D.,AD..#EEctj|d}t|djDcgc] }t |c}ddd}dg}t t |ddddg}t |dj d }|dd d}t|dt|dd |j}||d<|||||d } d |dt|dj vr|dt|dj d } t| dtk(r( | Dcgc]}tj|c}| d <na | Dcgc]&}tj|jd(c}| d <n*d |dvr#|dd d} tj| | d <|j| Scc}wcc}w#tj$r| Dcgc]}|ncc}wc}| d <YJwxYwcc}w#tj$r+| Dcgc]}|jdncc}wc}| d <YwxYw)aO Return some information about this tileset that will help render it in on the client. Parameters ---------- filename: str The filename of the h5py file containing the tileset info. Returns ------- tileset_info: {} A dictionary containing the information describing this dataset r0r1NrJrr3r5infoz tile-sizer4rI)r1min_posmax_posr2r row_infosutf8)r7r8sortedkeysrsumattrsr9rNr typejsonloadsJSONDecodeErrorrr?) rrBr0r1rdrer2 first_chromr r6rfrow_infos_encodeds r-r6r6sU" (C A !M*:*?*?*ABQ#a&BCDbDIK cG3q{8,Q/012GAfIOOK01IH+f%a(K =!#k!n"56x@MSS TEE!H # La &s;q>':;AAAm$SQ%89?? L  !  $ CDM,NqTZZ],N [) R:C-56DJJqxx/0- [) & !fIk226$(JJ/@$A [!GGI cC@-O'' C8A,B1Q,B,B [) C-'' RGP,Q!QXXf-=,Q,Q [) RseG(G ,GG H+G>?HG G;# G-, G;:G;>HIH32 II) rrnrLr7numpyr utilsrr.rr;r6rhrGr-rus0 @)Xy.xHrG