
    tf              
       F   d dl mZmZ d dlZd dlZd dlZd dlZd dl	Z	d dl
Z
dZej                  Z ej                  d      Z eej#                               Z e ee e ee                        Zej0                  d  ej2                  e      f   Zd Zd Zd Zd Zd	 Zy)
    )divisionprint_functionN   z4http://s3.amazonaws.com/pkerp/data/mm9/chromInfo.txtc                     	 t        t        |kD        d   dz
  }t        |   }|t        |   z
  }| j                  ||t        |   f      S # t        $ r | j                  d   cY S w xY w)Nr      nbins)wherecumul_lengths
IndexErrorinfochromosomesoffset
chromsizes)cposcidchromrelPoss        `/var/www/html/software/conda/envs/higlass/lib/python3.12/site-packages/clodius/higlass_getter.pyabsCoord2binr      su    MC'(+a/ E=%%F88UFJu$5677	  vvgs   A
 
A%$A%c                    t        |      }t        j                  | d      5 }t        j                  ||         }t        ||      }	t        ||      }
t        ||      }t        ||      }|j                  d      |	|
||f   }d d d        t        j                         j                               }t        j                  d|i      S # 1 sw Y   GxY w)NrT)balancedense)strh5pyFilecoolerCoolerr   matrixlisttoarrayraveljsondumps)FILEPATH	zoomLevel	startPos1endPos1	startPos2endPos2	groupnamefr   i0i1j0j1matflats                  r   getDatar4      s    II	8S	! 3QMM!I,'!Y'!W%!Y'!W%hhth$RUBrE\23 ##%&D::wo&&3 3s   A$CCc                 (   | d   }| d   }t        ||      }t        ||      }	t        ||      }
t        ||      }|	|z
  dk(  s||
z
  dk(  rt        j                  g d      S t        j                         }|||	|
|f   }|d   j	                  t
        j                        }|d   j	                  t
        j                        }t        |   |d   z   |d	<   t        |   |d
   z   |d<   t        d|dt        j                         |z
         |g d   S )Nr   r    r   genome_start
genome_endbalancedcolumnschrom1chrom2start1r7   end2r8   zz:zt:)	r   pd	DataFrametimeapplychromid_mapgetr
   print)cooler_matrixr'   r(   r)   r*   r+   r   r    r.   r/   r0   r1   t1pixelscid1cid2s                   r   getData2rL   1   s   hA8$F	a	#B	a	!B	a	#B	a	!B
RA~"r'a||$NOO	BBrE2b5L!F(!!+//2D(!!+//2D*406(3CCF>(.?F<	$	4r!12<==    c                    | d   }t        ||      }t        ||      }t        ||      }	t        ||      }
||z
  dk(  s|
|	z
  dk(  rt        j                  g d      S |j                  dt        j
                        |||	|
f   }t        |      st        j                  g d      S t        ||	      }t        ||
      }|j                         g d   || }|d   j                  j                  |d<   t        j                  ||      }t        |d	      |d
   z   |d<   t        |d      |d   z   |d<   |d   |d   z  |d   z  |d<   |g d   S )Nr   r   r6   r:   T)	as_pixels	max_chunk)r   startendweightr   r<   r>   r7   r=   r?   r8   countweight1weight2r9   )r   r@   rA   r    npinflenminmaxbinscatcodesr   annotater
   )rG   r'   r(   r)   r*   r+   r   r.   r/   r0   r1   rI   lohir\   s                  r   getData3rb   I   s_   hA	a	#B	a	!B	a	#B	a	!B
RA~"r'a||$NOOXXX72r"uEFv;||$NOO	RB	RB66878B?DM%%++DM__VT*F*6(+;<vh?OOF>()9:VF^KF<6)+<<vi?PPF:<==rM   c                    t        j                  | d      5 }t        t        d         }t        |d   j                  d         }d}||z  t
        z  }t        d||t
               t        t        j                  t        j                  |                  }|t
        z  d|z  z  }ddg||g||t
        d	}d d d        |S # 1 sw Y   S xY w)
Nr   0zbin-sizei  ztotal_length:   g        )min_posmax_posmax_zoom	max_widthbins_per_dimension)r   r   intr
   attrsTILESIZErF   rW   ceillog2r$   r%   )r&   r-   total_lengthbinsizen_tilesn_zoomsrj   r   s           r   getInforu   e   s    	8S	! 
Q=,-afll:./(83o|Wh?bggbggg./0h&g5	 Sz$l3""*

" K#
" Ks   BB??C	) 
__future__r   r   r$   numpyrW   pandasr@   r   r   rB   rn   flatnonzeror	   read_chromsizesr   r!   keysr   dictziprangerY   rD   r_cumsumr
   r   r4   rL   rb   ru    rM   r   <module>r      s    /      
#V##:
 :??$%3{E#k*:$;<=a:../8'$>0>8rM   