tf(ddlZdZdZddZddZy)NcTtj|}|j}|jdj }t t |j}d|vrd}nt||jd}d|vrd}n||jd}|d|d|d|d|d |d dg|dg||tt |d jd |d jd Dcgc] }t|c}dd }|j|Scc}w)NzSELECT * from tileset_infoversionheaderr 2) zoom_step max_lengthassembly tile_sizemax_zoom max_widthmin_posmax_posrr chromsizes info_version) sqlite3connectcursorexecutefetchonenextzip descriptionintindexlistsplitclose) db_fileconnrrowcolnamesrrcsts_infos ]/var/www/html/software/conda/envs/higlass/lib/python3.12/site-packages/clodius/tiles/beddb.py tileset_infor.s* ??7 #D [[]F ..5 6 ? ? ACC++,-H c(..345xX^^H-.V!fFVFV3F8 A T"s1v||D7I$JSW$J K G  JJL N %Ks3D%"cg}|D]}|jdd}|jd}t|d}t|d}d}i} g} td|zD]"} d|z|z| z} t|||z| } | | z } $||| fgz }|S)a; Generate tiles from this dataset. Parameters ---------- filepath: str The filename of the sqlite db file tile_ids: [str...] A list of tile ids of the form Returns ------- tiles: [(tile_id, tile_value),...] A list of values indexed by the tile position |r.rr)r%r"range get_1D_tiles) filepathtile_ids to_returntile_idtile_no_optionspartszoomxpos extra_zoomnew_rowsj higher_xposold_rowss r-tilesrA+s I+!--,Q/%%c*58}58} qJ' !Az/D014K#HdZ.?MH  H  ! w)** )+, c t|}|d}tj|}|j}|dd|zz }||z} | ||zz} dj || | } |dk(rdj || | } |dk(rdj || | } |j | j } g} | D]} |djd }|d }|d }t|||zD]U}||z}|d z|z}||ks||k\s|d |d |d|d||d jd d}|dk(r|d|d<| |gz } W|j| S#t$r|d}YwxYw)a Retrieve a contiguous set of tiles from a db tile file. Parameters ---------- db_file: str The filename of the sqlite db file zoom: int The zoom level tile_x_pos: int The position of the first tile num_tiles: int The number of tiles to retrieve Returns ------- tiles: {pos: tile_value} A set of tiles, indexed by position rrr SELECT startPos, endPos, chrOffset, importance, fields, uid FROM intervals,position_index WHERE intervals.id=position_index.id AND zoomLevel <= {} AND rEndPos >= {} AND rStartPos <= {} 3 SELECT startPos, endPos, chrOffset, importance, fields, uid FROM intervals,position_index WHERE intervals.id=position_index.id AND rStartZoomLevel <= {} AND rEndZoomLevel >= 0 AND rEndPos >= {} AND rStartPos <= {} r 9 SELECT startPos, endPos, chrOffset, importance, fields, uid, name FROM intervals,position_index WHERE intervals.id=position_index.id AND rStartZoomLevel <= {} AND rEndZoomLevel >= 0 AND rEndPos >= {} AND rStartPos <= {} r utf-8rrrr xStartxEnd chrOffset importanceuidfieldsr name) r.rrrformatrfetchalldecodeAttributeErrorr2r%r&)r'r: tile_x_pos num_tilesr,rr(c tile_widthtile_start_pos tile_end_posqueryrowsr=rrMx_startx_endi tile_x_start tile_x_endto_adds r-r3r3Vs(7#Gi G ??7 #D A%T 1J*,N!I $::L   nl  !|   F .,  !|   F .,   99U  $ $ &DH % A$++g&CA$!z: #9: %Az>La%:-J#(=daD!"1"#A$djj. a<%&qTF6NVH$# %%6 JJL O5 A$C s8EE"!E"c \t|}|d}tj|}|j}d}dj |||} |dk(rdj |||} |dk(rdj |||} || dj |z } |j | j } g} | D]Q} | d jd } | d | d | d| d| | d jdd}|dk(r| d|d<| |gz } S|j| S#t$r| d } Y^wxYw)aP List the entries between start and end Parameters ---------- db_file: str The filename of the sqlite db file start_pos: int The start position from where to retrieve data end_pos: int The end position to get data max_entries: int The maximum number of results to return rirDrrEr rFz LIMIT {}r rGrrrr rHr rO) r.rrrrPrrQrRrSr%r&)r'startend max_entriesr,rr(rVr:rZr[r=r\rMrbs r- list_itemsrgs7#Gi G ??7 #D A D   eS  !|   F %  !|   F %   ##K00 99U  $ $ &DH  A$++g&C daD1A$djj&   a<qTF6NVH%& JJL O% A$C s8DD+*D+)r)N)rr.rAr3rgrBr-ris!$N(Vl^\rB