tf0ddlZddlZddlZdZddZdZy)Ncg}|D]~}|jd}t|d}t|d}d}i}g||<td|zD]-} d|z|z| z} t|||z| } ||xx| | z cc</|||fgz }|S)a; Generate tiles from this dataset. Parameters ---------- filepath: str The filename of the sqlite db file tile_ids: [str...] A list of tile ids of the form Returns ------- tiles: [(tile_id, tile_value),...] A list of values indexed by the tile position .)splitintrange get_1D_tiles) filepathtile_ids to_returntile_idpartszoomxpos extra_zoomnew_rowsj higher_xposold_rowss a/var/www/html/software/conda/envs/higlass/lib/python3.12/site-packages/clodius/tiles/bedarcsdb.pytilesrs I+ c"58}58} qJ' 4Az/D014K#HdZ.?MH TNh{3 3N  4 w)** !+$ ct|}tj|}|j}|dd|zz }||z} | ||zz} dj || | } |j | j } dj || | } |j | j }t}tjt}tttj| |d}d}|D]} |djd }||vr|j!|t#||kDrn|d }|d }|d}|d }t%|||zD]`}||z}|d z|z}||kr||k\s ||ks ||k\s&||xx|d |d |d|d |d |d||dj'ddgz cc<b|j)|S#t$r|d}YwxYw)a Retrieve a contiguous set of tiles from a 2D db tile file. Parameters ---------- db_file: str The filename of the sqlite db file zoom: int The zoom level tile_x_pos: int The x position of the first tile numx: int The width of the block of tiles to retrieve Returns ------- tiles: {pos: tile_value} A set of tiles, indexed by position max_widthrz SELECT fromX, toX, fromY, toY, chrOffset, importance, fields, uid FROM intervals,position_index WHERE intervals.id=position_index.id AND zoomLevel <= {} AND rToX >= {} AND rFromX <= {} ORDER BY importance z SELECT fromX, toX, fromY, toY, chrOffset, importance, fields, uid FROM intervals,position_index WHERE intervals.id=position_index.id AND zoomLevel <= {} AND rToY >= {} AND rFromY <= {} ORDER BY importance c|d S)N)xs rzget_1D_tiles..js 1r)keyzutf-8rrrr )xStartxEndyStartyEnd chrOffset importanceuidfields)get_2d_tileset_infosqlite3connectcursorformatexecutefetchallsetcol defaultdictlistsorteditchaindecodeAttributeErroraddlenr rclose)db_filer tile_x_posnumxnumy tileset_infoconnc tile_widthtile_x_start_postile_x_end_posqueryrowsquery1rows1 seen_uidsrall_rowsMAX_ROWSrr.x_startx_endy_starty_endi tile_x_start tile_x_ends rr r -s?('w/L ??7 #D Ak*Q$Y6J!J.% ):;N      99U  $ $ &D     IIf  & & (EIt$HF288D%0oFGHH ' A$++g&C )   c y>H $ A$!A$!z:#45 Az>La%:-J*$,)>*$,)> "#A$ !!"#A$ !!%&qT&'d""#A$**T"2     )'P JJL OK A$C sGG('G(c  tj|}|j}|jdj }|d|d|d|d|d|d|d|d ddg|d|dgd }|j |S) NzSELECT * from tileset_inforrrrr%rr&r$) zoom_step max_lengthassembly chrom_names chrom_sizes tile_sizemax_zoomrmin_posmax_pos)r1r2r3r5fetchonerB)rCrHrIrowrGs rr0r0s ??7 #D A ))0 1 : : rjs $Nk\r