tfLBddlmZddlZddlZdZddZddZdZ dZ y)Nc|d}d|jvr|jd}nd}d|jvr|jd}n|jd}|||jd|jd|jdd S) zt Get information about the tileset. :param hdf_file: A file handle for an HDF5 file (h5py.File('...')) metazmin-posrzmax-posz max-lengthz max-widthmax-zoom tile-size)max_posmin_pos max_widthmax_zoom tile_size)attrs)hdf_filedrrs [/var/www/html/software/conda/envs/higlass/lib/python3.12/site-packages/clodius/hdf_tiles.pyget_tileset_infors AAGG'')$AGG'')$'','WW[)GGJ'WW[)  c|dkr td| t|}||kr%||zdz}||||dkr|dz}n|}||kr%|S)aBisect_left with with an additional comparator. Based on the bisect_left function from the python bisect module. Return the index where to insert item x in list a, assuming a is sorted. The return value i is such that all e in a[:i] have e < x, and all e in a[i:] have e >= x. So if x already appears in the list, a.insert(x) will insert just before the leftmost x already there. Optional args lo (default 0) and hi (default len(a)) bound the slice of a to be searched. Args: a (array): The array to bisect x (object): The object to find the insertion point of lo (int): The starting index of items to search in a hi (int): The end index of items to search in a comparator (function(a,b)): A way to compare objects rlo must be non-negative ValueErrorlenaxlohi comparatormids r bisect_leftr !sj, Av233 z V r'Bw1n afa 1 $qBB r' Irc|dkr td| t|}||kr%||zdz}||||dkr|}n|dz}||kr%|S)a Bisect_right with with an additional comparator. Based on the bisect_right function from the python bisect module. Return the index where to insert item x in list a, assuming a is sorted. The return value i is such that all e in a[:i] have e <= x, and all e in a[i:] have e > x. So if x already appears in the list, a.insert(x) will insert just after the rightmost x already there. Optional args lo (default 0) and hi (default len(a)) bound the slice of a to be searched. Args: a (array): The array to bisect x (object): The object to find the insertion point of lo (int): The starting index of items to search in a hi (int): The end index of items to search in a comparator (function(a,b)): A way to compare objects rrrrrrs r bisect_rightr"Dsj, Av233 z V r'Bw1n a3 1 $BqB r' IrcR|d|zkDr tdgS|dkr tdgS|d}t|jd}t|jd}|t|}|d||z zz}||z}||z} d} d } t ||g| } t || g| } || | S) ak Get a discrete set of data from an hdf_tile file. Args: hdf_file (h5py.File): File handle for the file containing the information z (int): The zoom level of this tile x (int): The x position of this tile Returns: A 2D array of entries at that position. It is assumed that names of the columns are known. rOUT OF RIGHT RANGErOUT OF LEFT RANGErrrc<t|dt|dz S)Nrintrbs rcomparator_startz+get_discrete_data..comparator_start1Q4y3qt9$$rc<t|dt|dz S)Nrr'r)s rcomparator_endz)get_discrete_data..comparator_endr,r)r)printr(r strr r")r zrrr r f tile_width tile_starttile_endr+r.tile_data_start tile_data_ends rget_discrete_datar8gs 16z "# 1u !" AAGGK()I177:&'H QAQ8a<00JZJJ&H%%"!j\>NOO XJ;KLM _] ++rc |d|zkDr tdgS|dkr tdgS|d}t|jd}t|jd}t|jd}|d|zz}d |jvrt|jd }n|}||z } |tj| |z z} | | z } d| z} || z} t|d| zz|z}t|| z}t|d| zz } |d t t| z}||kDrWt j||z }|jt jtj|t| }nj||krC||kr>|||d d }t j||d z|tj|t| }n"tj|||t| } d }d t t| z|vr|d t t| z}tj|||t| }d||z z}t jt|}|j|||z }||z }|S|S)z Return a tile from an hdf_file. :param hdf_file: A file handle for an HDF5 file (h5py.File('...')) :param z: The zoom level :param x: The x position of the tile rr$rr%rrz zoom-steprz max-positionvalues_Nr nan_values_) r/r(r mathfloorr0npzerosfillnanct aggregater)r r1rrr zoom_stepr r max_positionrznext_stored_zoom zoom_offset num_to_aggtotal_in_length start_posend_posr2r ret_arrayf_nan nan_arraynum_aggregatednum_vals_arraynum_summed_arrayaverages_arrays rget_datarTs 16z "# 1u !" AAGGK()IAGGK()I177:&'HAM)I 177>23  AB!4::b9n#==''Kk!J*,OQk))I57I)o-.G|a+;&;;rr r"r8rTrrrYs+ 6 F F0,f\r