o
    VA(fg  ã                   @   sž  d dl Z d dlZd dlT d dlmZ d dlT d dlT d dlT d dlmZ d dlm	Z	 d dlT d dl
mZ d dl
T d dlmZ d dlT d dlmZ d dlT d dlmZ d dlT d dlmZ d dlT d dlmZ d dlT d dlmZ d dlT d dlmZ d dlT d dlmZ d dlmZ d dlT d dlZ ej!ej! ej! ej! ej! ej! e	j! ej! ej! ej! ej! dg dg Z!d dl"m#Z#m$Z$ dd„ Z%d	d
„ Z&dd„ Z'dS )é    N)Ú*)ÚSamtoolsErrorr   ÚPileup)Ú__version__Ú__samtools_version__c                  C   s    t j t j t j t¡¡¡} t j | dd¡t j | dd¡g}t j | dd¡t j | dd¡g}| g}||fD ]}|D ]}t j |¡rL| t j |¡¡  nq9q5|S )z%return a list of include directories.z..ZhtslibZincludeZsamtools)ÚosÚpathÚabspathÚjoinÚdirnameÚ__file__ÚexistsÚappend)r   Zhtslib_possibilitiesZsamtool_possibilitiesZincludesZheader_locationsZheader_location© r   ú.lib/python3.10/site-packages/pysam/__init__.pyÚget_include5   s    ÿÿþ€r   c                   C   s   g S )z0return a list of defined compilation parameters.r   r   r   r   r   Úget_definesN   s   r   c                     sX   t j t j t j t¡¡¡‰ g d¢} tjjdkr|  	d¡ t
 d¡‰‡ ‡fdd„| D ƒS )z+return a list of libraries to link against.)ÚlibctabixproxiesÚ	libcfaidxÚlibcsamfileÚlibcvcfÚlibcbcfÚ	libctabixZbuiltinÚ
libchtslibZ
EXT_SUFFIXc                    s   g | ]}t j ˆ |ˆ ¡‘qS r   )r   r   r
   )Ú.0Úx©r   Zsor   r   Ú
<listcomp>d   s    z!get_libraries.<locals>.<listcomp>)r   r   r	   r
   r   r   ÚpysamZconfigZHTSLIBr   Ú	sysconfigZget_config_var)Z
pysam_libsr   r   r   Úget_librariesU   s   

r    )(r   r   Zpysam.libchtslibr   Zpysam.libcsamtoolsZpysam.libcbcftoolsZpysam.libcutilsZ	libcutilsZpysam.libcfaidxr   Zpysam.libctabixr   Zpysam.libctabixproxiesr   Zpysam.libcsamfiler   Zpysam.libcalignmentfileZlibcalignmentfileZpysam.libcalignedsegmentZlibcalignedsegmentZpysam.libcvcfr   Zpysam.libcbcfr   Zpysam.libcbgzfZlibcbgzfZpysam.utilsr   Zpysam.Pileupr   Zpysam.samtoolsZpysam.configr   Ú__all__Zpysam.versionr   r   r   r   r    r   r   r   r   Ú<module>   sx    ÿþýüûúùø	÷
öõôÿ