o Df@sddlZddlZddlZddlZddlZddlZddlmZddlmZddl Z zddl Z Wn e y9dZ Ynwe e ZddZddZGdd d ZGd d d eZed d ZdefddZde jfddZGdddZdS)N)OptionalxopencCszGtd }|}Wdn1swYtd|}|r>tt|ddddd}|d krCt |t WSWt SWt St ySYt Sw) a3 Return the number of available virtual or physical CPUs on this system. The number of available CPUs can be smaller than the total number of CPUs when the cpuset(7) mechanism is in use, as is the case on some cluster systems. Adapted from http://stackoverflow.com/a/1006301/715090 z/proc/self/statusNz(?m)^Cpus_allowed:\s*(.*)$,1r) openreadresearchbinintgroupreplacecountminmultiprocessing cpu_countOSError)fstatusmresrW/var/www/html/software/conda/envs/catlas/lib/python3.10/site-packages/cutadapt/utils.pyavailable_cpu_counts"   " rcCs@tdurdSttj\}}t|||}ttj||fdSN)resourceZ getrlimitZ RLIMIT_NOFILErZ setrlimit)nZsoftZhardrrrraise_open_files_limit-s r!c@s:eZdZdZdddZedddZdd d Zd d Zd S)Progressz9 Print an animated progress report to sys.stderr rcCs,||_d|_t|_|j|_||_dS)zQ every: minimum time to wait in seconds between progress updates rN)_every_ntime_time _start_timescissors _animation)selfZeveryrrr__init__:s  zProgress.__init__ ccs dt|dfdt|dffD]7\}}|D]0}dD]+}d|}d||}|r6|r.dnd}||}}n|r:d nd }d |||d Vqqqq) NTFr)TF -z>8z=8z8s4     K