o Nrf @sddlZddlmZddlmZeejdddejd d d d d ddZeejdedejdedejdddd ddddZ eejdedejdedejdddd ddejdddd ddddZ eejdedejdedejdddd dddd Z eejd!edejd"d#e dd$d%Z eejd!edejd"d#e dd&d'ZdS)(N)fileops)cli cool_pathZ COOL_PATH)metavarz--longz-lzLong listing formatT)helpis_flagcCstddlm}t|D],}|d|}|r2||j}|dur$|d}n|d|d}t|q t|q dS)z* List all coolers inside a file. r)Coolerz::Nz  ,)apir rZ list_coolersbinsizeclickecho)rlongr Z group_pathurirsr[/var/www/html/software/conda/envs/catlas/lib/python3.10/site-packages/cooler/cli/fileops.pylss      rsrc_uri)typedst_uriz --overwritez-wz;Truncate and replace destination file if it already exists.F)rr defaultcCtj|||ddS)z Copy a cooler from one file to another or within the same file. See also: h5copy, h5repack tools from HDF5 suite.  overwriteN)rcprrrrrrrsrz--softz-szCreates a soft link rather than a hard link if the source and destination file are the same. Otherwise, creates an external link. This type of link uses a path rather than a pointer.cCstj||||ddS)z Create a hard link to a cooler (rather than a true copy) in the same file. Also supports soft links (in the same file) or external links (different files). )rsoftN)rln)rrrr rrrr!;sr!cCr)z0 Rename a cooler within the same file. rN)rmvrrrrr"Xsr"rz-Lz--levelcCt||}t|dS)z+ Display a file's data hierarchy. N)rZpprint_data_treerrrleveltrrrtreej r'cCr#)z0 Display a file's attribute hierarchy. N)rZpprint_attr_treerrr$rrrattrsvr(r))rrrcommandargumentoptionrstrrr!r"intr'r)rrrrsn