o Nrf7<@sddlZddlZddlZddlmZddlZddlZddlZ ddl m Z ddl Z ddl Z ddl mZddlmZddlmZddlmZddlmZdHddZddZed d Zd d Ze e j!d ddde j"ddddde j"ddde #e$de j"ddde%de j"ddde%de j"dd d!e%de j"d"d#d$e%de j"d%d&d'd(e j"d)d*d+d(e j"d,d-e&dd.e j"d/d0dd(e j"d1d2dd(e j"d3d4dd(e j"d5e #gd6d7d8d9e j"d:d;dd(e j"dd?de j"d@dAe #dBdCgdBd.dDdEZ'e e j!d ddde j"ddddde j"ddde #e$de j"d/d0dd(e j"d:d;dd(e j"dd?ddFdGZ(dS)IN)tqdm)clic Csx|d}|d}|ddd}tt|ddd}d d |D}|d}t|d }t|d } ||| |fS) aM Convert a line from an epilogos bedfile to vector format. Parameters ----------- bedline: [string,....] A line from a bedfile broken up into its constituent parts (e.g. ["chr1", "1000", "2000", "[1,2,34,5]"]) Returns ------- An array containing the values associated with that line r :cSs|dS)Nrxr r \/var/www/html/software/conda/envs/catlas/lib/python3.10/site-packages/clodius/cli/convert.py)sz,epilogos_bedline_to_vector..)keycSsg|]}|dqS)rr ).0vr r r *sz.epilogos_bedline_to_vector..r)stripsplitsortedast literal_evalint) bedlines row_infosbedlinepartsZ array_strZ array_valstateschromstartendr r r epilogos_bedline_to_vectors   r!csh|d}|d}|d}t|d}t|d}||dfddtt|D}||||fS)a Convert a line from a bedfile containing states in categorical data to vector format. Parameters ---------- bedline: [string,...] A line form a bedfile broken up into its contituent parts (e.g. ["chr1", "1000", "2000", "state"])) states_dic: {'key':val,...} A dictionary containing the states in the file with a corresponding value (e.g. {'state1_name': 1, 'state2_name': 2,...}) Returns ------- Four variables containing the values associated with that line: chrom, start, end, states_vector (e.g. chrom = "chr1", start = 1000, end = 2000, states_vector = [1,0,0,0]) rrrrrcsg|] }|kr dndqS)rrr )rindexstater r rSsz,states_bedline_to_vector..)rrrrangelen)r states_dicrrrrr Z states_vectorr r#r states_bedline_to_vector3s    r(cCsdS)zW Aggregate a data file so that it stores the data at multiple resolutions. 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