o
    Nrf                     @   s   d dl mZmZ d dlZd dlZd dlZd dlZd dl	Z	d dl
Z
dZejZedZee ZeeeeeeZejd eef Zdd Zdd Zd	d
 Zdd Zdd ZdS )    )divisionprint_functionN   z4http://s3.amazonaws.com/pkerp/data/mm9/chromInfo.txtc                 C   s^   zt t|kd d }W n ty   | jd  Y S w t| }|t|  }| ||t| fS )Nr      Znbins)wherecumul_lengths
IndexErrorinfochromosomesoffset
chromsizes)cposZcidchromZrelPos r   _/var/www/html/software/conda/envs/catlas/lib/python3.10/site-packages/clodius/higlass_getter.pyabsCoord2bin   s   r   c                 C   s   t |}t| d1}t|| }t||}	t||}
t||}t||}|jdd|	|
||f }W d    n1 s>w   Y  t| 	 }t
d|iS )NrT)ZbalanceZdense)strh5pyFilecoolerZCoolerr   matrixlistZtoarrayZraveljsondumps)FILEPATH	zoomLevel	startPos1endPos1	startPos2endPos2Z	groupnamefr   i0i1j0j1matZflatr   r   r   getData   s   



	r(   c                 C   s   | d }| d }t ||}t ||}	t ||}
t ||}|	| dks(||
 dkr0tjg ddS t }|||	|
|f }|d tj}|d tj}t| |d  |d	< t| |d
  |d< td|dt |  |g d S )Nr   r   r   genome_start
genome_endbalancedcolumnschrom1chrom2start1r*   end2r+   zz:zt:)	r   pd	DataFrametimeapplychromid_mapgetr   print)cooler_matrixr   r   r   r    r!   r   r   r#   r$   r%   r&   t1pixelsZcid1Zcid2r   r   r   getData21   s    



r=   c                 C   s0  | d }t ||}t ||}t ||}	t ||}
|| dks$|
|	 dkr,tjg ddS |jdtjd|||	|
f }t|sHtjg ddS t||	}t||
}|	 g d || }|d j
j|d< t||}t|d	  |d
  |d< t|d  |d  |d< |d |d  |d  |d< |g d S )Nr   r   r)   r-   T)Z	as_pixelsZ	max_chunk)r   startendweightr   r/   r1   r*   r0   r2   r+   countZweight1Zweight2r,   )r   r3   r4   r   npinflenminmaxbinscatcodesr   Zannotater   )r:   r   r   r   r    r!   r   r#   r$   r%   r&   r<   lohirG   r   r   r   getData3I   s&   



 

rL   c                 C   s   t | dE}ttd }t|d jd }d}|| t }td||t ttt	|}|t d|  }ddg||g||td	}W d    |S 1 sNw   Y  |S )
Nr   0zbin-sizei  ztotal_length:   g        )Zmin_posZmax_posZmax_zoom	max_widthZbins_per_dimension)r   r   intr   attrsTILESIZEr9   rB   ceillog2r   r   )r   r"   total_lengthZbinsizeZn_tilesZn_zoomsrP   r	   r   r   r   getInfoe   s$   
rW   ) 
__future__r   r   r   numpyrB   Zpandasr3   r   r   r5   rS   Zflatnonzeror   Zread_chromsizesr   r   keysr
   dictziprangerD   r7   Zr_Zcumsumr   r   r(   r=   rL   rW   r   r   r   r   <module>   s(    
