o NrfÆã@sddlmZddd„ZdS)éNcsf|durt |¡‰ˆj}‡fdd„ˆjDƒ}n|durtdƒ‚t |¡‰t |¡}t |¡}ˆ||fS)a¥ Load a set of chromosomes from a file or using an assembly identifier. If using just an assembly identifier the chromsizes will be loaded from the negspy repository. Parameters: ----------- chromsizes_filename: string The file containing the tab-delimited chromosome sizes assembly: string Assembly name (e.g. 'hg19'). Not necessary if a chromsizes_filename is passed in Ncsg|]}ˆj|‘qS©)Z chrom_lengths)Ú.0Úc©Z chrom_inforú\/var/www/html/software/conda/envs/catlas/lib/python3.10/site-packages/clodius/chromosomes.pyÚ sz#load_chromsizes..zŸNo assembly or chromsizes specified. Please specify an assembly using the --assembly parameter or a set of chromsizes using the --chromsizes-filename parameter)ÚncZget_chrominfo_from_fileZ chrom_orderÚ ValueErrorZ get_chrominfoZget_chromorderZget_chromsizes)Zchromsizes_filenameZassemblyZ chrom_namesZ chrom_sizesrrrÚload_chromsizess ÿ    r )N)Znegspy.coordinatesZ coordinatesrr rrrrÚs