o
    Nrf/                     @   sB   d dl mZ d dlZd dlZd dlZdd Zedkre  dS dS )    Nc                  C   s   t jdd} | d |  }|jdkrtj}n|jdd  dkr)t|jd}nt|jd}d }d	}|D ],}|	d
}|d	 dkrY|d urPt
d|| d	}| dd  }q5|t| 7 }q5t
d|| d S )Nz]
    
    python create_chrominfo.py [genome.fa/-]

    Create a chrominfo file for a genome
)description
fasta_file-z.gzrrbr   zutf-8>z{}	{}   )argparseArgumentParseradd_argument
parse_argsr   sysstdingzipopendecodeprintformatstriplen)parserargsfZ	curr_nameZ	curr_sizeline r   f/var/www/html/software/conda/envs/catlas/lib/python3.10/site-packages/../../../bin/create_chrominfo.pymain   s(   


r   __main__)Z	Bio.SeqIOZSeqIOZbsior
   r   r   r   __name__r   r   r   r   <module>   s   4
