#!/bin/bash
#PBS -N wholemousebrain
#PBS -q workq
#PBS -l select=1:ncpus=6
#PBS -l walltime=05:00:00
#PBS -o output_test.log
#PBS -e error_test.log

cd /var/www/html/data/JASPAR/jaspar_tfbs_extraction/wholemousebrain
for i in bed*;do
  /var/www/html/data/JASPAR/jaspar_tfbs_extraction/bin/extract_TFBSs_JASPAR.sh -i $i  -b /mnt/data/catlas_downloads/JASPAR/JASPAR2024_mm10.bb  -p 6 -o ./${i}_JASPAR.bed -s 300
done