motif	logp
DLX2(Homeobox)	-848.4
En1(Homeobox)	-801.2
DLX1(Homeobox)	-778.2
DLX5(Homeobox)	-769.6
Lhx2(Homeobox)	-749.2
LHX9(Homeobox)	-714.4
Dlx3(Homeobox)	-710.1
Lhx1(Homeobox)	-698.5
Lhx3(Homeobox)	-675.9
Nkx6.1(Homeobox)	-502.8
Oct6(POU,Homeobox)	-407.4
Brn1(POU,Homeobox)	-396.5
Isl1(Homeobox)	-328.5
Oct4(POU,Homeobox)	-290.9
Oct11(POU,Homeobox)	-249
Nanog(Homeobox)	-161.8
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)	-155.8
Brn2(POU,Homeobox)	-144.3
Oct2(POU,Homeobox)	-122.2
Prop1(Homeobox)	-119.2
OCT:OCT(POU,Homeobox,IR1)	-101.9
OCT:OCT-short(POU,Homeobox)	-98.88
Pit1(Homeobox)	-94.74
E2A(bHLH)	-91.15
Ascl2(bHLH)	-90.65
Phox2a(Homeobox)	-84.43
Pdx1(Homeobox)	-82.16
PGR(NR)	-78.45
Pit1+1bp(Homeobox)	-77.82
Slug(Zf)	-75.47
Snail1(Zf)	-72.5
GRE(NR),IR3	-69.38
Fos(bZIP)	-63.56
Fra1(bZIP)	-63.48
Phox2b(Homeobox)	-62.35
OCT:OCT(POU,Homeobox)	-58.55
HEB(bHLH)	-54.97
E2A(bHLH),near_PU.1	-54.51
Rfx2(HTH)	-54.24
Hoxa9(Homeobox)	-53.81
RFX(HTH)	-52
HLF(bZIP)	-50.94
Barx1(Homeobox)	-50.26
Atf3(bZIP)	-48.62
GRE(NR),IR3	-44.66
Fra2(bZIP)	-41.5
Tcf12(bHLH)	-41.35
Ptf1a(bHLH)	-40.52
AP-1(bZIP)	-40.27
NFIL3(bZIP)	-38.06
SCL(bHLH)	-36.93
Mef2d(MADS)	-36.52
Hoxb4(Homeobox)	-34.63
CEBP:AP1(bZIP)	-33.71
JunB(bZIP)	-33.66
Ascl1(bHLH)	-33.33
Sox6(HMG)	-31.92
Mef2b(MADS)	-31.47
Hoxa10(Homeobox)	-31.16
ARE(NR)	-30.77
Hoxd13(Homeobox)	-30.46
ZEB1(Zf)	-30.18
Sox17(HMG)	-29.84
BATF(bZIP)	-29.79
Gfi1b(Zf)	-29.75
MyoG(bHLH)	-29.7
Unknown(Homeobox)	-29.47
Sox2(HMG)	-28.59
MyoD(bHLH)	-28.1
X-box(HTH)	-27.16
Duxbl(Homeobox)	-26.3
Sox3(HMG)	-25.77
Myf5(bHLH)	-25.3
Pax7(Paired,Homeobox),longest	-25.12
Sox10(HMG)	-24.59
Sox15(HMG)	-23.58
PBX2(Homeobox)	-22.31
Rfx1(HTH)	-22.25
Maz(Zf)	-22.08
ZEB2(Zf)	-21.89
Mef2c(MADS)	-21.3
TRPS1(Zf)	-21.13
Bapx1(Homeobox)	-20.99
Eomes(T-box)	-19.99
PR(NR)	-19.9
Oct4:Sox17(POU,Homeobox,HMG)	-19.77
Sox7(HMG)	-19.54
Zfp281(Zf)	-18.35
Tbx5(T-box)	-17.64
Nkx2.2(Homeobox)	-16.83
Zic3(Zf)	-16.78
HOXA1(Homeobox)	-16.64
AR-halfsite(NR)	-16.56
Mef2a(MADS)	-16.49
Ap4(bHLH)	-16.09
Znf263(Zf)	-15.95
Atf4(bZIP)	-15.92
Unknown-ESC-element(?)	-15.45
Sox4(HMG)	-15.41
WT1(Zf)	-14.93
Nkx2.5(Homeobox)	-14.82
Pbx3(Homeobox)	-14.62
CHR(?)	-14.59
STAT6(Stat)	-14.49
Hoxa11(Homeobox)	-13.7
CEBP:CEBP(bZIP)	-13.68
CREB5(bZIP)	-13.64
Hoxd12(Homeobox)	-13.48
Tcf21(bHLH)	-13.35
BMYB(HTH)	-13.34
Hoxd11(Homeobox)	-13.25
Fosl2(bZIP)	-12.5
Tbx6(T-box)	-12.2
Nkx3.1(Homeobox)	-11.73
Hoxd10(Homeobox)	-11.63
Tbr1(T-box)	-11.48
Pknox1(Homeobox)	-11.35
KLF14(Zf)	-11.25
CEBP(bZIP)	-10.94
Hoxa13(Homeobox)	-10.35
PAX3:FKHR-fusion(Paired,Homeobox)	-10.08